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1

Theory-guided Data Science: A New Paradigm for Scientific Discovery from Data

Karpatne, Anuj, Atluri, Gowtham, Faghmous, James, Steinbach, Michael, Banerjee, Arindam, Ganguly, Auroop, Shekhar, Shashi, Samatova, Nagiza, Kumar, Vipin

Journal:

IEEE Transactions on Knowledge and Data Engineering

Year:

2017

Language:

english

File:

PDF, 5.38 MB

english, 2017

2

Gene network shaping of inherent noise spectra

Austin, D. W., Allen, M. S., McCollum, J. M., Dar, R. D., Wilgus, J. R., Sayler, G. S., Samatova, N. F., Cox, C. D., Simpson, M. L.

Journal:

Year:

2006

Language:

english

File:

PDF, 389 KB

english, 2006

3

A graph-based approach to find teleconnections in climate data

Kawale, Jaya, Liess, Stefan, Kumar, Arjun, Steinbach, Michael, Snyder, Peter, Kumar, Vipin, Ganguly, Auroop R., Samatova, Nagiza F., Semazzi, Fredrick

Journal:

Statistical Analysis and Data Mining

Year:

2013

Language:

english

File:

PDF, 7.16 MB

english, 2013

4

[IEEE 2012 IEEE International Conference on Cluster Computing (CLUSTER) - Beijing, China (2012.09.24-2012.09.28)] 2012 IEEE International Conference on Cluster Computing - Enabling Fast, Noncontiguous GPU Data Movement in Hybrid MPI+GPU Environments

Jenkins, John, Dinan, James, Balaji, Pavan, Samatova, Nagiza F., Thakur, Rajeev

Year:

2012

Language:

english

File:

PDF, 298 KB

english, 2012

5

[IEEE 2007 IEEE/ACS International Conference on Computer Systems and Applications - Amman, Jordan (2007.05.13-2007.05.16)] 2007 IEEE/ACS International Conference on Computer Systems and Applications - The Maximum Common Subgraph Problem: Faster Solutions via Vertex Cover

Abu-Khzam, Faisal N., Samatova, Nagiza F., Rizk, Mohamad A., Langston, Michael A.

Year:

2007

Language:

english

File:

PDF, 209 KB

english, 2007

6

[IEEE Distributed Processing Symposium (IPDPS) - Miami, FL, USA (2008.04.14-2008.04.18)] 2008 IEEE International Symposium on Parallel and Distributed Processing - Parallel, scalable, memory-efficient backtracking for combinatoria modeling of large-scale biological systems

Park, Byung-Hoon, Schmidt, Matthew, Thomas, Kevin, Karpinets, Tatiana, Samatova, Nagiza F.

Year:

2008

Language:

english

File:

PDF, 359 KB

english, 2008

7

[IEEE 2010 IEEE International Conference on Data Mining Workshops (ICDMW) - Sydney, TBD, Australia (2010.12.13-2010.12.13)] 2010 IEEE International Conference on Data Mining Workshops - Detecting and Tracking Community Dynamics in Evolutionary Networks

Chen, Zhengzhang, Wilson, Kevin A., Jin, Ye, Hendrix, William, Samatova, Nagiza F.

Year:

2010

Language:

english

File:

PDF, 397 KB

english, 2010

8

[IEEE Comput. Soc 16th International Parallel and Distributed Processing Symposium. IPDPS 2002 - Ft. Lauderdale, FL, USA (15-19 April 2002)] Proceedings 16th International Parallel and Distributed Processing Symposium - Parallel out-of-core algorithm for genome-scale enumeration of metabolic systemic pathways

Samatova, N.F., Geist, A., Ostrouchov, G., Melechko, A.

Year:

2002

Language:

english

File:

PDF, 279 KB

english, 2002

9

Anomaly detection in dynamic networks: a survey

Ranshous, Stephen, Shen, Shitian, Koutra, Danai, Harenberg, Steve, Faloutsos, Christos, Samatova, Nagiza F.

Journal:

Wiley Interdisciplinary Reviews: Computational Statistics

Year:

2015

Language:

english

File:

PDF, 538 KB

english, 2015

10

Data-driven, data-intensive computing for modelling and analysis of biological networks: application to bioethanol production

Park, Byung-Hoon, Samatova, Nagiza F, Karpinets, Tatiana, Jallouk, Andrew, Molony, Scott, Horton, Scott, Arcangeli, Steven

Journal:

Journal of Physics Conference Series

Year:

2007

Language:

english

File:

PDF, 502 KB

english, 2007

11

[IEEE 2016 16th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid) - Cartagena, Colombia (2016.5.16-2016.5.19)] 2016 16th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing (CCGrid) - Usage Pattern-Driven Dynamic Data Layout Reorganization

Tang, Houjun, Byna, Suren, Harenberg, Steve, Zou, Xiaocheng, Zhang, Wenzhao, Wu, Kesheng, Dong, Bin, Rubel, Oliver, Bouchard, Kristofer, Klasky, Scott, Samatova, Nagiza F.

Year:

2016

Language:

english

File:

PDF, 534 KB

english, 2016

12

Enhancement of low-grade scheelite ore processing efficiency

Shepeta, E. D., Samatova, L. A., Alushkin, I. V., Shchipchin, V. B., Korneev, I. G.

Journal:

Journal of Mining Science

Year:

2016

Language:

english

File:

PDF, 330 KB

english, 2016

13

Investigation into flotation properties of new collectors when concentrating scheelite–sulfide ores

Samatova, L. A., Ryaboy, V. I., Shepeta, E. D.

Journal:

Russian Journal of Non-Ferrous Metals

Year:

2017

Language:

english

File:

PDF, 263 KB

english, 2017

14

Cotranslational Folding of Proteins on the Ribosome

Liutkute, Marija, Samatova, Ekaterina, Rodnina, Marina V.

Journal:

Year:

2020

Language:

english

File:

PDF, 2.92 MB

english, 2020

15

The one-dimensional GreenâNaghdi equations with a time dependent bottom topography and their conservation laws

Kaptsov, E. I., Meleshko, S. V., Samatova, N. F.

Journal:

Physics of Fluids

Year:

2020

File:

PDF, 1.24 MB

2020

16

The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior

James M. McCollum, Gregory D. Peterson, Chris D. Cox, Michael L. Simpson, Nagiza F. Samatova

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 896 KB

english, 2006

17

Sampling streaming data with replacement

Byung-Hoon Park, George Ostrouchov, Nagiza F. Samatova

Journal:

Computational Statistics & Data Analysis

Year:

2007

Language:

english

File:

PDF, 345 KB

english, 2007

18

Transparent runtime parallelization of the R scripting language

Jiangtian Li, Xiaosong Ma, Srikanth Yoginath, Guruprasad Kora, Nagiza F. Samatova

Journal:

Journal of Parallel and Distributed Computing

Year:

2011

Language:

english

File:

PDF, 720 KB

english, 2011

19

On parameterized complexity of the Multi-MCS problem

Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova

Journal:

Theoretical Computer Science

Year:

2009

Language:

english

File:

PDF, 556 KB

english, 2009

20

Theoretical underpinnings for maximal clique enumeration on perturbed graphs

William Hendrix, Matthew C. Schmidt, Paul Breimyer, Nagiza F. Samatova

Journal:

Theoretical Computer Science

Year:

2010

Language:

english

File:

PDF, 2.07 MB

english, 2010

21

DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules

Willam Hendrix, Andrea M Rocha, Kanchana Padmanabhan, Alok Choudhary, Kathleen Scott, James R Mihelcic, Nagiza F Samatova

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 376 KB

english, 2011

22

How strong are side chain interactions in the folding intermediate?

Ekaterina N. Samatova, Natalia S. Katina, Vitaly A. Balobanov, Bogdan S. Melnik, Dmitry A. Dolgikh, Valentina E. Bychkova, Alexei V. Finkelstein

Journal:

Protein Science

Year:

2009

Language:

english

File:

PDF, 539 KB

english, 2009

23

Thermochemical methods of treatment of low-grade phosphatic raw materials

A. S. Latkin, L. A. Samatova

Journal:

Journal of Mining Science

Year:

1998

Language:

english

File:

PDF, 276 KB

english, 1998

24

On the parameterized complexity of the Multi-MCT and Multi-MCST problems

Wenbin Chen, Matthew C. Schmidt, Nagiza F. Samatova

Journal:

Journal of Combinatorial Optimization

Year:

2011

Language:

english

File:

PDF, 244 KB

english, 2011

25

Lower temperature flotation of carbonate-fluorite ores

L. A. Kienko, L. A. Samatova, O. V. Voronova, S. A. Kondrat’ev

Journal:

Journal of Mining Science

Year:

2010

Language:

english

File:

PDF, 256 KB

english, 2010

26

A scalable, parallel algorithm for maximal clique enumeration

Matthew C. Schmidt, Nagiza F. Samatova, Kevin Thomas, Byung-Hoon Park

Journal:

Journal of Parallel and Distributed Computing

Year:

2009

Language:

english

File:

PDF, 3.92 MB

english, 2009

27

Vector space model for the generalized parts grouping problem

Nagiza F. Samatova, Thomas E. Potok, Michael R. Leuze

Journal:

Robotics and Computer-Integrated Manufacturing

Year:

2001

Language:

english

File:

PDF, 128 KB

english, 2001

28

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

VerBerkmoes, Nathan C, Power, Mary E, Samatova, Nagiza F, Carver, Rudolf L, Hettich, Robert L, Banfield, Jillian F, Belnap, Christopher P, Pan, Chongle

Journal:

The ISME Journal

Year:

2009

Language:

english

File:

PDF, 545 KB

english, 2009

29

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

Belnap, Christopher P, Pan, Chongle, Denef, Vincent J, Samatova, Nagiza F, Hettich, Robert L, Banfield, Jillian F

Journal:

The ISME Journal

Year:

2011

Language:

english

File:

PDF, 526 KB

english, 2011

30

pH-induced equilibrium unfolding of apomyoglobin: Substitutions at conserved Trp14 and Met131 and non-conserved Val17 positions

A. E. Dyuysekina, D. A. Dolgikh, E. N. Samatova, E. I. Tiktopulo, V. A. Balobanov, V. E. Bychkova

Journal:

Biochemistry (Moscow)

Year:

2008

Language:

english

File:

PDF, 213 KB

english, 2008

31

On the role of some conserved and nonconserved amino acid residues in the transitional state and intermediate of apomyoglobin folding

E. N. Baryshnikova (Samatova), B. S. Melnik, V. A. Balobanov, N. S. Katina, A. V. Finkelshtein, G. V. Semisotnov, V. E. Bychkova

Journal:

Molecular Biology

Year:

2009

Language:

english

File:

PDF, 436 KB

english, 2009

32

Mineralogical-technological peculiarities of the ores of the Skrytoe Scheelite deposit and prospects for their dressing

L. A. Samatova, V. I. Gvozdev, L. A. Kienko, O. V. Voronova, V. A. Sorokina

Journal:

Russian Journal of Pacific Geology

Year:

2011

Language:

english

File:

PDF, 1.31 MB

english, 2011

33

RACHET: An Efficient Cover-Based Merging of Clustering Hierarchies from Distributed Datasets

Nagiza F. Samatova, George Ostrouchov, Al Geist, Anatoli V. Melechko

Journal:

Distributed and Parallel Databases

Year:

2002

Language:

english

File:

PDF, 465 KB

english, 2002

34

ISABELA for effective in situ compression of scientific data

Sriram Lakshminarasimhan, Neil Shah, Stephane Ethier, Seung-Hoe Ku, C.S. Chang, Scott Klasky, Rob Latham, Rob Ross, Nagiza F. Samatova

Journal:

Concurrency and Computation: Practice and Experience

Year:

2012

Language:

english

File:

PDF, 3.70 MB

english, 2012

35

Synthesis and properties of N-[ω-(p-toluenesulfonoxyl)alkyl]uracils

V. S. Reznik, Yu. S. Shvetsov, R. Kh. Giniyatullin, N. A. Samatova, G. I. Podzigun

Journal:

Russian Chemical Bulletin

Year:

1980

Language:

english

File:

PDF, 520 KB

english, 1980

36

Reaction of monoamidophosphites with phosphorus thioacids

V. N. Eliseenkov, N. A. Samatova

Journal:

Russian Chemical Bulletin

Year:

1975

Language:

english

File:

PDF, 64 KB

english, 1975

37

Community-based anomaly detection in evolutionary networks

Zhengzhang Chen, William Hendrix, Nagiza F. Samatova

Journal:

Journal of Intelligent Information Systems

Year:

2012

Language:

english

File:

PDF, 734 KB

english, 2012

38

Group analysis of the thin film dewetting equation

S.V. Meleshko, N.F. Samatova, A.V. Melechko

Journal:

International Journal of Non-Linear Mechanics

Year:

2012

Language:

english

File:

PDF, 175 KB

english, 2012

39

A high-throughputde novosequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry

Chongle Pan, Byung H Park, William H McDonald, Patricia A Carey, Jillian F Banfield, Nathan C VerBerkmoes, Robert L Hettich, Nagiza F Samatova

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.37 MB

english, 2010

40

Efficientα,β-motif finder for identification of phenotype-related functional modules

Matthew C Schmidt, Andrea M Rocha, Kanchana Padmanabhan, Zhengzhang Chen, Kathleen Scott, James R Mihelcic, Nagiza F Samatova

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 517 KB

english, 2011

41

BioDEAL: community generation of biological annotations

Paul Breimyer, Nathan Green, Vinay Kumar, Nagiza F Samatova

Journal:

BMC Medical Informatics and Decision Making

Year:

2009

Language:

english

File:

PDF, 2.21 MB

english, 2009

42

In-silicoidentification of phenotype-biased functional modules

Padmanabhan, Kanchana, Wilson, Kevin, Rocha, Andrea M, Wang, Kuangyu, Mihelcic, James R, Samatova, Nagiza F

Journal:

Proteome Science

Year:

2012

Language:

english

File:

PDF, 610 KB

english, 2012

43

Detecting Differential and Correlated Protein Expression in Label-Free Shotgun Proteomics

Zhang, Bing, VerBerkmoes, Nathan C., Langston, Michael A., Uberbacher, Edward, Hettich, Robert L., Samatova, Nagiza F.

Journal:

Journal of Proteome Research

Year:

2006

Language:

english

File:

PDF, 494 KB

english, 2006

44

Multy-state protein: Determination of carbonic anhydrase free-energy landscape

B.S. Melnik, V.V. Marchenkov, S.R. Evdokimov, E.N. Samatova, N.V. Kotova

Journal:

Biochemical and Biophysical Research Communications

Year:

2008

Language:

english

File:

PDF, 381 KB

english, 2008

45

In silico Discovery of Enzyme–Substrate Specificity-determining Residue Clusters

Gong-Xin Yu, Byung-Hoon Park, Praveen Chandramohan, Rajesh Munavalli, Al Geist, Nagiza F. Samatova

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 427 KB

english, 2005

46

On FastMap and the convex hull of multivariate data: toward fast and robust dimension reduction

Ostrouchov, G., Samatova, N.F.

Journal:

IEEE Transactions on Pattern Analysis and Machine Intelligence

Year:

2005

Language:

english

File:

PDF, 244 KB

english, 2005

47

Folding Intermediate and Folding Nucleus for I→N and U→I→N Transitions in Apomyoglobin: Contributions by Conserved and Nonconserved Residues

Samatova, Ekaterina N., Melnik, Bogdan S., Balobanov, Vitaly A., Katina, Natalya S., Dolgikh, Dmitry A., Semisotnov, Gennady V., Finkelstein, Alexei V., Bychkova, Valentina E.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 595 KB

english, 2010

48

Poor scheelite ores from Primorye deposits: Mineralogy and processing characteristics and dressing flowsheets

Samatova, L. A., Shepeta, E. D., Gvozdev, V. I.

Journal:

Journal of Mining Science

Year:

2012

Language:

english

File:

PDF, 469 KB

english, 2012

49

Kinetics of calcium minerals flotation from Scheelite-carbonate ores

Shepeta, E. D., Samatova, L. A., Kondrat’ev, S. A.

Journal:

Journal of Mining Science

Year:

2012

Language:

english

File:

PDF, 227 KB

english, 2012

50

Spice: discovery of phenotype-determining component interplays

Zhengzhang Chen, Kanchana Padmanabhan, Andrea M Rocha, Yekaterina Shpanskaya, James R Mihelcic, Kathleen Scott, Nagiza F Samatova

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 3.92 MB

english, 2012